Which of these is the better choice?
The price doesn't matter in this case.
This one seems better but it's cheapter…
http://www.amazon.com/...0039V4ME2/
I like this one but it doesn't have the filter kit or the extra flash
http://www.amazon.com/...B002ACEV38
Which one would you say is better?
The second one is the better starter kit.
When buying a flashgun or tripod, you need to put as much care into the choice as you do with the camera. Those screw-on lenses are cr*p, and the money you save could go towards a better flash and tripod.
What matters here is camera, lens and a card, everything else is gravy.